Table 2 Genes down-regulated at 18°C in P. syringae pv. phaseolicola NPS3121 Gen/ORF Gene product Ratio Cluster 9: Alginate synthesis PSPPH_1112 alginate biosynthesis protein AlgX 0.52 PSPPH_1113 alginate biosynthesis protein AlgG 0.19 PSPPH_1114 alginate selleck biosynthesis protein AlgE 0.18 PSPPH_1115 alginate biosynthesis protein AlgK 0.19 PSPPH_1118 alginate biosynthesis protein AlgD 0.46 PSPPH_1119 conserved hypothetical protein 0.46 algD algD (control) 0.25 Cluster 10: Plant-Pathogen LY333531 cost interactions PSPPH_A0075 type III
effector HopW1-2, truncated 0.60 PSPPH_A0127 type III effector HopAB1 0.42 PSPPH_A0127 type III effector HopAB1 0.65 PSPPH_A0127 virA type III HopAB1 (control) 0.57 PSPPH_A0120 avrC type III effector AvrB2 (control) 0.53 PSPPH_A0010 avrD type selleck screening library III effector hopD1 (control) 0.56 PSPPH_3992 pectin lyase 0.62 PSPPH_3993 acetyltransferase, GNAT family 0.57 PSPPH_A0072 polygalacturonase 0.50 Cluster 11: Type IV secretion system PSPPH_B0022 transcriptional regulator, PbsX family 0.65 PSPPH_ B0023 transcriptional regulator 0.64 PSPPH_ B0025 conjugal transfer protein 0.65 PSPPH_ B0027 conjugal transfer protein 0.65 PSPPH_ B0028 conjugal transfer protein 0.61 PSPPH_ B0031 conjugal transfer protein 0.65 PSPPH_ B0032 conjugal transfer protein 0.61 PSPPH_ B0034 conjugal transfer protein
0.62 PSPPH_ B0035 conjugal transfer protein 0.66 PSPPH_ B0036 conjugal transfer protein 0.51 PSPPH_ B0041 conjugal transfer protein 0.58 Cluster 12: Heat-shock proteins PSPPH_0381 heat shock protein HslVU, ATPase subunit HslU 0.65 PSPPH_0742 clpB protein 0.54 PSPPH_4077 chaperonin, 60 kDa. groEL 0.29 PSPPH_4206 dnaK protein 0.28 PSPPH_4206 dnaK protein 0.57 PSPPH_4207 heat shock protein GrpE 0.65 Cluster 13: Genes related with nucleic acids synthesis PSPPH_4598 DNA-directed RNA polymerase, beta’ Tryptophan synthase subunit 0.59 PSPPH_4599 DNA-directed RNA polymerase,
beta’ subunit 0.57 PSPPH_2495 DNA polymerase II 0.57 PSPPH_B0043 DNA topoisomerase III 0.64 PSPPH_A0002 Replication protein 0.54 Cluster 14: Unknown function PSPPH_0220 conserved hypothetical protein 0.64 PSPPH_0609 hypothetical protein PSPPH_0609 0.54 PSPPH_2482 conserved hypothetical protein 0.63 PSPPH_2855 hypothetical protein PSPPH_2855 0.43 PSPPH_3333 conserved hypothetical protein 0.36 PSPPH_3625 conserved hypothetical protein 0.59 PSPPH_4047 conserved hypothetical protein 0.66 PSPPH_A0040 hypothetical protein PSPPH_A0040 0.66 PSPPH_B0048 conserved hypothetical protein 0.60 Cluster 15: Uncharacterized function PSPPH_0012 glycyl-tRNA synthetase, alpha subunit 0.63 PSPPH_0033 3-oxoadipate enol-lactonase, putative 0.65 PSPPH_0072 membrane protein, putative 0.63 PSPPH_0080 ATP-dependent DNA helicase Rep 0.43 PSPPH_0117 phospholipase D family protein 0.63 PSPPH_0215 aldehyde dehydrogenase family protein 0.35 PSPPH_0296 colicin/pyocin immunity family protein 0.58 PSPPH_0360 periplasmic glucan biosynthesis protein 0.