CrossRef 32. Castillo M, Martin-Orue SM, Manzanilla EG, Badiola I, Martin M, Gasa J: Quantification of total bacteria, enterobacteria and lactobacilli populations in pig digesta by real-time PCR. Vet Microbiol 2006, 114:165–170.PubMedCrossRef 33. Yuan JS, Reed A, BMS-907351 chemical structure Chen F, Stewart JCN: Statistical analysis of real-time PCR data. BMC Bioinfor 2006, 7:85.CrossRef 34. Chopra AK, Xu X, Ribardo D, Gonzalez M, Kuhl K, Peterson JW, et al.: The cytotoxic enterotoxin of Aeromonas
hydrophila induces proinflammatory cytokine production and activates arachidonic acid metabolism in macrophages. Infect Immun 2000, 68:2808–2818.PubMedCrossRef 35. Ribardo DA, Kuhl KR, Boldogh I, Peterson JW, Houston CW, Chopra AK: Early cell signaling by the cytotoxic enterotoxin of Aeromonas hydrophila
in macrophages. Microb Pathog 2002, 32:149–163.PubMedCrossRef 36. Galindo CL, Sha J, Ribardo DA, Fadl AA, Pillai L, Chopra AK: Identification of Aeromonas hydrophila cytotoxic enterotoxin-induced genes in macrophages using microarrays. J Biol Chem GF120918 cell line 2003, 278:40198–40212.PubMedCrossRef 37. Uhlar CM, Whitehead AS: Serum amyloid A, the major vertebrate acute-phase reactant. Eur J Biochem 1999, 265:501–523.PubMedCrossRef 38. Morgan BP, Marchbank KJ, Longhi MP, Harris CL, Gallimore AM: Complement: central to innate immunity and bridging to adaptive responses. Immunol Lett 2005, 97:171–179.PubMedCrossRef 39. Sahu A, Lambris JD: Structure and biology of complement protein C3, a connecting link between innate and acquired immunity. Immunol Rev 2001, 180:35–48.PubMedCrossRef 40. Rawls JF, Mahowald MA, Ley RE, Jeffrey IG: Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection. Cell 2006, 127:423–433.PubMedCrossRef 41. Corless CE, Guiver M, Borrow R, Edwards-Jones V, Kaczmarski EB, Fox AJ: Contamination and p38 protein kinase sensitivity SB-3CT issues with a real-time universal 16S rRNA PCR. J Clin Microbiol 2000, 38:1747–1752.PubMed 42. Guiver M, Borrow R, Marsh J, Gray SJ, Kaczmarski EB, Howells D, Boseley P, Fox AJ: Evaluation of the Applied Biosystems automated Taqman polymerase chain reaction system
for the detection of meningococcal DNA. FEMS Immunol Med Microbiol 2000, 28:173–179.PubMedCrossRef 43. Lyons SR, Griffen AL, Leys EJ: Quantitative real-time PCR for Porphyromonas gingivalis and total bacteria. J Clin Microbiol 2000, 38:2362–2365.PubMed 44. Nadkarni MA, Martin FE, Jacques NA, Hunter N: Determination of bacterial load by real-time PCR using a broad-range [universal] probe and primers set. Microbiol 2002, 148:257–266. 45. Sen K: Rapid identification of Yersinia enterocolitica in blood by the 5′ nuclease PCR assay. J Clin Microbiol 2000, 38:1953–1958.PubMed 46. Ogura Y, Bonen DK, Inohara N, Nicolae DL, Chen FF, Ramos R, Britton H, Moran T, Karaliuskas R, Duerr RH, Achkar JP, Brant SR, Bayless TM, Kirschner BS, Hanauer SB, Nunez G, Cho JH: A frameshift mutation in NOD2 associated with susceptibility to Crohn’s disease.